References

 

1.   Karasev V.A. Amino acids of a canonical set as irreducible representations of vectors – diameters of dodecahedron. Deposited in VINITI (Moscow), 25.04.2007, No. 461-В2007 (in Russian).

2.   Karasev V.A.,  Luchinin V.V., Stefanov V.E. A model of the “molecular vector machine” for protein folding. – Proceedings of the 3-rd Moscow conference on computational molecular biology. Moscow, Russia, July 27-31, 2007, pp.134-136.

3.   Karasev V.A., Luchinin V.V. Model of topological coding of chain polymers for bionical nanoelectronics. I. A topological code and assingment of the physical operators to triplets of a code. Biotekhnosphera. 2009, No.1, p. 2-10. (in Russian). (Engl. Summary).

4.   Karasev V.A., Luchinin V.V. Model of topological coding of chain polymers for bionical nanoelectronics. II. The molecular vector machine and structure of the canonical set of physical operators. – Biotekhnosphera. 2009, No.2, pp. 6-12 (in Russian.) (Engl. Summary).

5.   Karasev V.A., Lucinin V.V. "Introduction to the design of  bionical nanosystems". M.: "FIZMATLIT", 2009. V. 464 pp.

6.   Kalishenko, E. L., Krinkin K. V. System of topological structure modeling of protein molecules//Prikladnaja Informatika. - 2009. - No4. - pp. 114-124 (in Russian).

7.   Kalishenko, E. L., Development of  system of topological structure modeling of protein molecules. Magister Diss. http://osll.spb.ru/projects/genecode/files  - Msc-Kalishenko, file Записка.odt.

8.   Alexandrova S.D. Development of tools for modeling the spatial structure of protein molecules. Magister Diss. http://osll.spb.ru/projects/genecode/files   -  Msc-Alexandrova, file Записка.pdf.

9.   Karasev V.A. On principles of construction of chain polymers. I. System of penta-fragments. – Biotekhnosphera, 2009, No.5, pp. 7- 17 (in Russian). (Engl. Summary).

10.       Karasev V.A. On principles of construction of chain polymers. II. Spatial structure of system of penta-fragments and algorithms of formation of secondary structures.  Biotekhnosphera, 2009, No.6, pp. 2- 13 (in Russian). (Engl. Summary).

11.        Karasev V.A. On principles of construction of chain polymers. III. Minor elements and general spatial structure of penta-fragments on the boolean hypercube B4. – Biotekhnosphera, 2011, No.1/2, pp.66-74 (in Russian). (Engl. Summary).  

12.       Karasev V.A., Belyaev A.I., Luchinin V.V. Database of protein pentafragments. Registered in the Registry database of the Federal Service for Intellectual Property, Patents and Trademarks of Russian Federation, № 2010620364 (Engl. Summary).

13.       Karasev V.A., Luchinin V.V. Method of predicting secondary structure of protein. Patent of Russian Federation No. 2 425 837. (in Russian, Engl. Summary p.2).

14.       Karasev V.A., Belyaev A.I., Luchinin V.V. A computer program for predicting the secondary structure of proteins (PREDICTOR). Registered in the Registry database of the Federal Service for Intellectual Property, Patents and Trademarks of Russian Federation, No.2010613374 (Engl. Summary).

15.       Schulz, G.E. & Schirmer, R.H. (1979). Principles of  Protein  Structure. New York - Heidelberg - Berlin: Springer-Verlag.

16.       Petrashen M.I., Trifonov E.D. Groups theory application in quantum mechanics. M.: Nauka, 1967, 308 pp.

 

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